Package: dataquieR 2.1.0.9005

dataquieR: Data Quality in Epidemiological Research

Data quality assessments guided by a 'data quality framework introduced by Schmidt and colleagues, 2021' <doi:10.1186/s12874-021-01252-7> target the data quality dimensions integrity, completeness, consistency, and accuracy. The scope of applicable functions rests on the availability of extensive metadata which can be provided in spreadsheet tables. Either standardized (e.g. as 'html5' reports) or individually tailored reports can be generated. For an introduction into the specification of corresponding metadata, please refer to the 'package website' <https://dataquality.qihs.uni-greifswald.de/Annotation_of_Metadata.html>.

Authors:University Medicine Greifswald [cph], Elisa Kasbohm [aut], Joany Marino [aut], Elena Salogni [aut], Adrian Richter [aut], Carsten Oliver Schmidt [aut], Stephan Struckmann [aut, cre], German Research Foundation [fnd], National Research Data Infrastructure for Personal Health Data: [fnd], European Union’s Horizon 2020 programme [fnd]

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dataquieR.pdf |dataquieR.html✨
dataquieR/json (API)
NEWS

# Install 'dataquieR' in R:
install.packages('dataquieR', repos = c('https://struckma.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://gitlab.com/libreumg/dataquier

On CRAN:

4.65 score 8 scripts 359 downloads 1 mentions 188 exports 79 dependencies

Last updated 5 months agofrom:d2a4b03690. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 22 2024
R-4.5-winWARNINGNov 22 2024
R-4.5-linuxWARNINGNov 22 2024
R-4.4-winWARNINGNov 22 2024
R-4.4-macWARNINGNov 22 2024
R-4.3-winWARNINGNov 22 2024
R-4.3-macWARNINGNov 22 2024

Exports:.get_internal_apiacc_distributionsacc_distributions_locacc_distributions_loc_ecdfacc_distributions_onlyacc_distributions_only_ecdfacc_distributions_propacc_end_digitsacc_loessacc_marginsacc_multivariate_outlieracc_robust_univariate_outlieracc_shape_or_scaleacc_univariate_outlieracc_varcompAPI_VERSIONASSOCIATION_DIRECTIONASSOCIATION_FORMASSOCIATION_METRICASSOCIATION_RANGECHECK_IDCHECK_LABELCO_VARScom_item_missingnesscom_qualified_item_missingnesscom_qualified_segment_missingnesscom_segment_missingnesscom_unit_missingnesscon_contradictionscon_contradictions_redcapcon_inadmissible_categoricalcon_limit_deviationscontradiction_functionscontradiction_functions_descriptionsCONTRADICTION_TERMCONTRADICTION_TYPECONTRADICTIONSDATA_ENTRY_TYPEDATA_PREPARATIONDATA_TYPEDATA_TYPESDATA_TYPES_OF_R_TYPEDECIMALSdes_scatterplot_matrixdes_summaryDETECTION_LIMIT_LOWDETECTION_LIMIT_UPDETECTION_LIMITSDF_ELEMENT_COUNTDF_ID_REF_TABLEDF_ID_VARSDF_NAMEDF_RECORD_CHECKDF_RECORD_COUNTDF_UNIQUE_IDDF_UNIQUE_ROWSDISTRIBUTIONDISTRIBUTIONSdq_reportdq_report_bydq_report2END_DIGIT_CHECKGOLDSTANDARDGRADING_RULESETGROUP_VAR_DEVICEGROUP_VAR_OBSERVERHARD_LIMIT_LOWHARD_LIMIT_UPHARD_LIMITSINCL_HARD_LIMIT_LOWINCL_HARD_LIMIT_UPINCL_LOCATION_LIMIT_LOWINCL_LOCATION_LIMIT_UPINCL_PROPORTION_LIMIT_LOWINCL_PROPORTION_LIMIT_UPINCL_SOFT_LIMIT_LOWINCL_SOFT_LIMIT_UPint_all_datastructure_dataframeint_all_datastructure_segmentint_datatype_matrixint_duplicate_contentint_duplicate_idsint_part_vars_structureint_sts_element_dataframeint_sts_element_segmentint_unexp_elementsint_unexp_records_dataframeint_unexp_records_segmentint_unexp_records_setJUMP_LISTKEY_DATETIMEKEY_DEVICEKEY_OBSERVERKEY_STUDY_SEGMENTLABELLOCATION_LIMIT_LOWLOCATION_LIMIT_UPLOCATION_METRICLOCATION_RANGELONG_LABELMISSING_LISTMISSING_LIST_TABLEMULTIVARIATE_OUTLIER_CHECKTYPEN_RULESnresPART_VARpipeline_recursive_resultpipeline_vectorizedprep_add_cause_label_dfprep_add_data_framesprep_add_missing_codesprep_add_to_metaprep_apply_codingprep_check_for_dataquieR_updatesprep_check_meta_data_dataframeprep_check_meta_data_segmentprep_check_meta_namesprep_clean_labelsprep_combine_report_summariesprep_create_metaprep_create_meta_data_fileprep_datatype_from_dataprep_deparse_assignmentsprep_dq_data_type_ofprep_expand_codesprep_extract_cause_label_dfprep_extract_classes_by_functionsprep_extract_summaryprep_get_data_frameprep_get_labelsprep_get_user_nameprep_link_escapeprep_list_dataframesprep_load_folder_with_metadataprep_load_reportprep_load_workbook_like_fileprep_map_labelsprep_merge_study_dataprep_meta_data_v1_to_item_level_meta_dataprep_min_obs_levelprep_pmapprep_prepare_dataframesprep_purge_data_frame_cacheprep_render_pie_chart_from_summaryclasses_ggplot2prep_render_pie_chart_from_summaryclasses_plotlyprep_save_reportprep_scalelevel_from_data_and_metadataprep_study2metaprep_summary_to_classesprep_title_escapeprep_valuelabels_from_datapro_applicability_matrixPROPORTION_LIMIT_LOWPROPORTION_LIMIT_UPPROPORTION_RANGERECODEREL_VALresnamesSCALE_LEVELSCALE_LEVELSSEGMENT_ID_REF_TABLESEGMENT_ID_TABLESEGMENT_ID_VARSSEGMENT_MISSSEGMENT_PART_VARSSEGMENT_RECORD_CHECKSEGMENT_RECORD_COUNTSEGMENT_UNIQUE_ROWSSOFT_LIMIT_LOWSOFT_LIMIT_UPSOFT_LIMITSSPLIT_CHARSTUDY_SEGMENTTIME_VARUNITUNIT_IS_COUNTUNIT_PREFIXESUNIT_SOURCESUNITSUNIVARIATE_OUTLIER_CHECKTYPEVALUE_LABELSVAR_NAMESVARATT_REQUIRE_LEVELSVARIABLE_LISTVARIABLE_ORDERVARIABLE_ROLEVARIABLE_ROLESWELL_KNOWN_META_VARIABLE_NAMES

Dependencies:backportsbase64encBBmiscbitbit64bootcellrangercheckmateclicliprcolorspacecpp11crayoncurldata.tableDEoptimRdplyremmeansestimabilityfansifarverforcatsforeigngenericsggplot2gluegtablehavenhmsisobandlabelinglatticelifecyclelme4lubridatemagrittrMASSMatrixmgcvminqaMultinomialCImunsellmvtnormnlmenloptrnumDerivparallelMappatchworkpillarpkgconfigprettyunitsprogressqmrparserR.devicesR.methodsS3R.ooR.utilsR6RColorBrewerRcppRcppEigenreadrreadxlrematchriorlangrobustbasescalestibbletidyselecttimechangetzdbunitsutf8vctrsviridisLitevroomwithrwritexl

dataquieR example report

Elisa Kasbohm, Joany Marino, Elena Salogni, Adrian Richter, Stephan Struckmann, Carsten Oliver Schmidt

Rendered fromDQ-report-example.Rmdusingknitr::rmarkdownon Nov 22 2024.

Last update: 2024-03-29
Started: 2020-12-01