Package: dataquieR 2.5.0

dataquieR: Data Quality in Epidemiological Research

Data quality assessments guided by a 'data quality framework introduced by Schmidt and colleagues, 2021' <doi:10.1186/s12874-021-01252-7> target the data quality dimensions integrity, completeness, consistency, and accuracy. The scope of applicable functions rests on the availability of extensive metadata which can be provided in spreadsheet tables. Either standardized (e.g. as 'html5' reports) or individually tailored reports can be generated. For an introduction into the specification of corresponding metadata, please refer to the 'package website' <https://dataquality.qihs.uni-greifswald.de/VIN_Annotation_of_Metadata.html>.

Authors:University Medicine Greifswald [cph], Elisa Kasbohm [aut], Joany Marino [aut], Elena Salogni [aut], Adrian Richter [aut], Carsten Oliver Schmidt [aut], Stephan Struckmann [aut, cre], German Research Foundation [fnd], National Research Data Infrastructure for Personal Health Data: [fnd], European Union’s Horizon 2020 programme [fnd]

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NEWS

# Install 'dataquieR' in R:
install.packages('dataquieR', repos = c('https://struckma.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://gitlab.com/libreumg/dataquier

On CRAN:

4.85 score 9 scripts 433 downloads 1 mentions 223 exports 82 dependencies

Last updated 1 hours agofrom:756c0d149c. Checks:1 OK, 7 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 20 2025
R-4.5-winWARNINGFeb 20 2025
R-4.5-macWARNINGFeb 20 2025
R-4.5-linuxWARNINGFeb 20 2025
R-4.4-winWARNINGFeb 20 2025
R-4.4-macWARNINGFeb 20 2025
R-4.3-winWARNINGFeb 20 2025
R-4.3-macWARNINGFeb 20 2025

Exports:.get_internal_apiacc_cat_distributionsacc_distributionsacc_distributions_ecdfacc_distributions_locacc_distributions_onlyacc_distributions_propacc_end_digitsacc_loessacc_marginsacc_multivariate_outlieracc_robust_univariate_outlieracc_shape_or_scaleacc_univariate_outlieracc_varcompAPI_VERSIONASSOCIATION_DIRECTIONASSOCIATION_FORMASSOCIATION_METRICASSOCIATION_RANGECHECK_IDCHECK_LABELCO_VARSCODE_CLASSCODE_CLASSESCODE_INTERPRETCODE_LABELCODE_LIST_TABLECODE_ORDERCODE_VALUEcom_item_missingnesscom_qualified_item_missingnesscom_qualified_segment_missingnesscom_segment_missingnesscom_unit_missingnesscon_contradictionscon_contradictions_redcapcon_inadmissible_categoricalcon_inadmissible_vocabularycon_limit_deviationscontradiction_functionscontradiction_functions_descriptionsCONTRADICTION_TERMCONTRADICTION_TYPECONTRADICTIONSDATA_ENTRY_TYPEDATA_PREPARATIONDATA_TYPEDATA_TYPESDATA_TYPES_OF_R_TYPEDATAFRAMESDECIMALSdes_scatterplot_matrixdes_summarydes_summary_categoricaldes_summary_continuousDETECTION_LIMIT_LOWDETECTION_LIMIT_UPDETECTION_LIMITSDF_CODEDF_ELEMENT_COUNTDF_ID_REF_TABLEDF_ID_VARSDF_NAMEDF_RECORD_CHECKDF_RECORD_COUNTDF_UNIQUE_IDDF_UNIQUE_ROWSDISTRIBUTIONDISTRIBUTIONSdq_reportdq_report_bydq_report2ENCODINGEND_DIGIT_CHECKGOLDSTANDARDGRADING_RULESETGROUP_VAR_DEVICEGROUP_VAR_OBSERVERHARD_LIMIT_LOWHARD_LIMIT_UPHARD_LIMITSINCL_HARD_LIMIT_LOWINCL_HARD_LIMIT_UPINCL_LOCATION_LIMIT_LOWINCL_LOCATION_LIMIT_UPINCL_PROPORTION_LIMIT_LOWINCL_PROPORTION_LIMIT_UPINCL_SOFT_LIMIT_LOWINCL_SOFT_LIMIT_UPint_all_datastructure_dataframeint_all_datastructure_segmentint_datatype_matrixint_duplicate_contentint_duplicate_idsint_encoding_errorsint_part_vars_structureint_sts_element_dataframeint_sts_element_segmentint_unexp_elementsint_unexp_records_dataframeint_unexp_records_segmentint_unexp_records_setJUMP_LISTKEY_DATETIMEKEY_DEVICEKEY_OBSERVERKEY_STUDY_SEGMENTLABELLOCATION_LIMIT_LOWLOCATION_LIMIT_UPLOCATION_METRICLOCATION_RANGELONG_LABELMISSING_LISTMISSING_LIST_TABLEMULTIVARIATE_OUTLIER_CHECKMULTIVARIATE_OUTLIER_CHECKTYPEN_RULESnresPART_VARpipeline_recursive_resultpipeline_vectorizedprep_acc_distributions_with_ecdfprep_add_cause_label_dfprep_add_computed_variablesprep_add_data_framesprep_add_missing_codesprep_add_to_metaprep_apply_codingprep_check_for_dataquieR_updatesprep_check_meta_data_dataframeprep_check_meta_data_segmentprep_check_meta_namesprep_clean_labelsprep_combine_report_summariesprep_compare_meta_with_studyprep_create_metaprep_create_meta_data_fileprep_create_storr_factoryprep_datatype_from_dataprep_deparse_assignmentsprep_dq_data_type_ofprep_expand_codesprep_extract_cause_label_dfprep_extract_classes_by_functionsprep_extract_summaryprep_get_data_frameprep_get_labelsprep_get_study_data_segmentprep_get_user_nameprep_get_variantprep_guess_encodingprep_link_escapeprep_list_dataframesprep_list_vocprep_load_folder_with_metadataprep_load_reportprep_load_report_from_backendprep_load_workbook_like_fileprep_map_labelsprep_merge_study_dataprep_meta_data_v1_to_item_level_meta_dataprep_min_obs_levelprep_open_in_excelprep_pmapprep_prepare_dataframesprep_purge_data_frame_cacheprep_remove_from_cacheprep_render_pie_chart_from_summaryclasses_ggplot2prep_render_pie_chart_from_summaryclasses_plotlyprep_robust_guess_data_typeprep_save_reportprep_scalelevel_from_data_and_metadataprep_set_backendprep_study2metaprep_summary_to_classesprep_title_escapeprep_undiscloseprep_unsplit_val_tabsprep_valuelabels_from_datapro_applicability_matrixPROPORTION_LIMIT_LOWPROPORTION_LIMIT_UPPROPORTION_RANGERECODE_CASESRECODE_CONTROLREL_VALresnamesRULESCALE_LEVELSCALE_LEVELSSEGMENT_ID_REF_TABLESEGMENT_ID_TABLESEGMENT_ID_VARSSEGMENT_MISSSEGMENT_PART_VARSSEGMENT_RECORD_CHECKSEGMENT_RECORD_COUNTSEGMENT_UNIQUE_IDSEGMENT_UNIQUE_ROWSSOFT_LIMIT_LOWSOFT_LIMIT_UPSOFT_LIMITSSPLIT_CHARSTANDARDIZED_VOCABULARY_TABLESTUDY_SEGMENTTIME_VARUNITUNIT_IS_COUNTUNIT_PREFIXESUNIT_SOURCESUNITSUNIVARIATE_OUTLIER_CHECKTYPEVALUE_LABEL_TABLEVALUE_LABELSVAR_NAMESVARATT_REQUIRE_LEVELSVARIABLE_LISTVARIABLE_ORDERVARIABLE_ROLEVARIABLE_ROLESWELL_KNOWN_META_VARIABLE_NAMES

Dependencies:backportsbase64encBBmiscbitbit64bootcellrangercheckmateclicliprcolorspacecpp11crayoncurldata.tableDEoptimRdplyremmeansestimabilityfansifarverforcatsforeigngenericsggplot2gluegtablehavenhmsisobandlabelinglatticelifecyclelme4lubridatemagrittrMASSMatrixmgcvminqaMultinomialCImunsellmvtnormnlmenloptrnumDerivparallelMappatchworkpillarpkgconfigprettyunitsprogressqmrparserR.devicesR.methodsS3R.ooR.utilsR6rbibutilsRColorBrewerRcppRcppEigenRdpackreadrreadxlreformulasrematchriorlangrobustbasescalestibbletidyselecttimechangetzdbunitsutf8vctrsviridisLitevroomwithrwritexl

dataquieR

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Last update: 2024-12-22
Started: 2020-12-01