Package: dataquieR 2.5.1.9003

dataquieR: Data Quality in Epidemiological Research

Data quality assessments guided by a 'data quality framework introduced by Schmidt and colleagues, 2021' <doi:10.1186/s12874-021-01252-7> target the data quality dimensions integrity, completeness, consistency, and accuracy. The scope of applicable functions rests on the availability of extensive metadata which can be provided in spreadsheet tables. Either standardized (e.g. as 'html5' reports) or individually tailored reports can be generated. For an introduction into the specification of corresponding metadata, please refer to the 'package website' <https://dataquality.qihs.uni-greifswald.de/VIN_Annotation_of_Metadata.html>.

Authors:University Medicine Greifswald [cph], Elisa Kasbohm [aut], Elena Salogni [aut], Joany Marino [aut], Adrian Richter [aut], Carsten Oliver Schmidt [aut], Stephan Struckmann [aut, cre], German Research Foundation [fnd], National Research Data Infrastructure for Personal Health Data: [fnd], European Union’s Horizon 2020 programme [fnd]

dataquieR_2.5.1.9003.tar.gz
dataquieR_2.5.1.9003.zip(r-4.5)dataquieR_2.5.1.9003.zip(r-4.4)dataquieR_2.5.1.9003.zip(r-4.3)
dataquieR_2.5.1.9003.tgz(r-4.5-any)dataquieR_2.5.1.9003.tgz(r-4.4-any)dataquieR_2.5.1.9003.tgz(r-4.3-any)
dataquieR_2.5.1.9003.tar.gz(r-4.5-noble)dataquieR_2.5.1.9003.tar.gz(r-4.4-noble)
dataquieR_2.5.1.9003.tgz(r-4.4-emscripten)dataquieR_2.5.1.9003.tgz(r-4.3-emscripten)
dataquieR.pdf |dataquieR.html✨
dataquieR/json (API)
NEWS

# Install 'dataquieR' in R:
install.packages('dataquieR', repos = c('https://struckma.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://gitlab.com/libreumg/dataquier

On CRAN:

Conda:

4.90 score 9 scripts 776 downloads 1 mentions 223 exports 82 dependencies

Last updated 21 days agofrom:b2861f286e. Checks:1 OK, 8 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 10 2025
R-4.5-winWARNINGMar 10 2025
R-4.5-macWARNINGMar 10 2025
R-4.5-linuxWARNINGMar 10 2025
R-4.4-winWARNINGMar 10 2025
R-4.4-macWARNINGMar 10 2025
R-4.4-linuxWARNINGMar 10 2025
R-4.3-winWARNINGMar 10 2025
R-4.3-macWARNINGMar 10 2025

Exports:.get_internal_apiacc_cat_distributionsacc_distributionsacc_distributions_ecdfacc_distributions_locacc_distributions_onlyacc_distributions_propacc_end_digitsacc_loessacc_marginsacc_multivariate_outlieracc_robust_univariate_outlieracc_shape_or_scaleacc_univariate_outlieracc_varcompAPI_VERSIONASSOCIATION_DIRECTIONASSOCIATION_FORMASSOCIATION_METRICASSOCIATION_RANGECHECK_IDCHECK_LABELCO_VARSCODE_CLASSCODE_CLASSESCODE_INTERPRETCODE_LABELCODE_LIST_TABLECODE_ORDERCODE_VALUEcom_item_missingnesscom_qualified_item_missingnesscom_qualified_segment_missingnesscom_segment_missingnesscom_unit_missingnesscon_contradictionscon_contradictions_redcapcon_inadmissible_categoricalcon_inadmissible_vocabularycon_limit_deviationscontradiction_functionscontradiction_functions_descriptionsCONTRADICTION_TERMCONTRADICTION_TYPECONTRADICTIONSDATA_ENTRY_TYPEDATA_PREPARATIONDATA_TYPEDATA_TYPESDATA_TYPES_OF_R_TYPEDATAFRAMESDECIMALSdes_scatterplot_matrixdes_summarydes_summary_categoricaldes_summary_continuousDETECTION_LIMIT_LOWDETECTION_LIMIT_UPDETECTION_LIMITSDF_CODEDF_ELEMENT_COUNTDF_ID_REF_TABLEDF_ID_VARSDF_NAMEDF_RECORD_CHECKDF_RECORD_COUNTDF_UNIQUE_IDDF_UNIQUE_ROWSDISTRIBUTIONDISTRIBUTIONSdq_reportdq_report_bydq_report2ENCODINGEND_DIGIT_CHECKGOLDSTANDARDGRADING_RULESETGROUP_VAR_DEVICEGROUP_VAR_OBSERVERHARD_LIMIT_LOWHARD_LIMIT_UPHARD_LIMITSINCL_HARD_LIMIT_LOWINCL_HARD_LIMIT_UPINCL_LOCATION_LIMIT_LOWINCL_LOCATION_LIMIT_UPINCL_PROPORTION_LIMIT_LOWINCL_PROPORTION_LIMIT_UPINCL_SOFT_LIMIT_LOWINCL_SOFT_LIMIT_UPint_all_datastructure_dataframeint_all_datastructure_segmentint_datatype_matrixint_duplicate_contentint_duplicate_idsint_encoding_errorsint_part_vars_structureint_sts_element_dataframeint_sts_element_segmentint_unexp_elementsint_unexp_records_dataframeint_unexp_records_segmentint_unexp_records_setJUMP_LISTKEY_DATETIMEKEY_DEVICEKEY_OBSERVERKEY_STUDY_SEGMENTLABELLOCATION_LIMIT_LOWLOCATION_LIMIT_UPLOCATION_METRICLOCATION_RANGELONG_LABELMISSING_LISTMISSING_LIST_TABLEMULTIVARIATE_OUTLIER_CHECKMULTIVARIATE_OUTLIER_CHECKTYPEN_RULESnresPART_VARpipeline_recursive_resultpipeline_vectorizedprep_acc_distributions_with_ecdfprep_add_cause_label_dfprep_add_computed_variablesprep_add_data_framesprep_add_missing_codesprep_add_to_metaprep_apply_codingprep_check_for_dataquieR_updatesprep_check_meta_data_dataframeprep_check_meta_data_segmentprep_check_meta_namesprep_clean_labelsprep_combine_report_summariesprep_compare_meta_with_studyprep_create_metaprep_create_meta_data_fileprep_create_storr_factoryprep_datatype_from_dataprep_deparse_assignmentsprep_dq_data_type_ofprep_expand_codesprep_extract_cause_label_dfprep_extract_classes_by_functionsprep_extract_summaryprep_get_data_frameprep_get_labelsprep_get_study_data_segmentprep_get_user_nameprep_get_variantprep_guess_encodingprep_link_escapeprep_list_dataframesprep_list_vocprep_load_folder_with_metadataprep_load_reportprep_load_report_from_backendprep_load_workbook_like_fileprep_map_labelsprep_merge_study_dataprep_meta_data_v1_to_item_level_meta_dataprep_min_obs_levelprep_open_in_excelprep_pmapprep_prepare_dataframesprep_purge_data_frame_cacheprep_remove_from_cacheprep_render_pie_chart_from_summaryclasses_ggplot2prep_render_pie_chart_from_summaryclasses_plotlyprep_robust_guess_data_typeprep_save_reportprep_scalelevel_from_data_and_metadataprep_set_backendprep_study2metaprep_summary_to_classesprep_title_escapeprep_undiscloseprep_unsplit_val_tabsprep_valuelabels_from_datapro_applicability_matrixPROPORTION_LIMIT_LOWPROPORTION_LIMIT_UPPROPORTION_RANGERECODE_CASESRECODE_CONTROLREL_VALresnamesRULESCALE_LEVELSCALE_LEVELSSEGMENT_ID_REF_TABLESEGMENT_ID_TABLESEGMENT_ID_VARSSEGMENT_MISSSEGMENT_PART_VARSSEGMENT_RECORD_CHECKSEGMENT_RECORD_COUNTSEGMENT_UNIQUE_IDSEGMENT_UNIQUE_ROWSSOFT_LIMIT_LOWSOFT_LIMIT_UPSOFT_LIMITSSPLIT_CHARSTANDARDIZED_VOCABULARY_TABLESTUDY_SEGMENTTIME_VARUNITUNIT_IS_COUNTUNIT_PREFIXESUNIT_SOURCESUNITSUNIVARIATE_OUTLIER_CHECKTYPEVALUE_LABEL_TABLEVALUE_LABELSVAR_NAMESVARATT_REQUIRE_LEVELSVARIABLE_LISTVARIABLE_ORDERVARIABLE_ROLEVARIABLE_ROLESWELL_KNOWN_META_VARIABLE_NAMES

Dependencies:backportsbase64encBBmiscbitbit64bootcellrangercheckmateclicliprcolorspacecpp11crayoncurldata.tableDEoptimRdplyremmeansestimabilityfansifarverforcatsforeigngenericsggplot2gluegtablehavenhmsisobandlabelinglatticelifecyclelme4lubridatemagrittrMASSMatrixmgcvminqaMultinomialCImunsellmvtnormnlmenloptrnumDerivparallelMappatchworkpillarpkgconfigprettyunitsprogressqmrparserR.devicesR.methodsS3R.ooR.utilsR6rbibutilsRColorBrewerRcppRcppEigenRdpackreadrreadxlreformulasrematchriorlangrobustbasescalestibbletidyselecttimechangetzdbunitsutf8vctrsviridisLitevroomwithrwritexl

dataquieR

Rendered fromDQ-report-example.Rmdusingknitr::rmarkdownon Mar 10 2025.

Last update: 2024-12-22
Started: 2020-12-01